Bongaigaon's roots are deeply entwined with the ancient history of Assam, specifically the Kamatapur and Koch kingdoms that once ruled the region. The area was long known for its dense forests and was a strategic point for regional trade. In antiquity, it was an integral part of the undivided Goalpara district, carrying a rich legacy of indigenous Bodo, Rajbongshi, and Assamese cultures.
During the British colonial era, the region saw significant transformation with the introduction of the railways. The establishment of the Assam Bengal Railway line placed Bongaigaon firmly on the map as an essential transit route connecting the resource-rich northeast to Bengal and beyond.
In the post-independence era, Bongaigaon experienced a massive economic boom following the government's decision to establish the Bongaigaon Refinery and Petrochemicals Limited (BRPL) in the 1970s. This industrial anchor catalyzed rapid urbanization. Acknowledging its administrative and economic importance, the Government of Assam carved out Bongaigaon as an independent district in 1989 from the Goalpara and Kokrajhar districts, allowing the city to function as its new headquarters.

